Publications from 2003
  1. "1.7Å structure of Fve a member of the new Fungal Immunomodulatory Protein Family" Palasingam Paaventhan, Jeremiah S. Joseph, Seow See Voon, Vaday Shai, Howard Robinson, Chua Kaw Yan, Prasanna R KOLATKAR (2003) J Mol Biol. 332 . 461-470


  2. "A Genomewide Screen of 345 Families for Autism Susceptibility Loci" A. L. Yonan, D. H. Geschwind, R. M. Cantor, Jianjun LIU, J. D. Terwilliger, S-H Juo, A. Grunn, A. A. Palmer, S. J. Spence, P. K. E. Magnusson, R. Cheng, M. Alarc?n, R, T. C. Gilliam (2003) Am J Hum Genet.. 73 . 886-897


  3. "A novel Y-chromosome variant puts an upper limit on the timing of first entry into the Americas" Mark Thomas SEIELSTAD, Yuldasheva N, Singh N, Underhill P, Oefner P, Shen P, Wells RS (2003) American Journal of Human Genetics. 73 . 700-705


  4. "A score test for establishing non-inferiority with respect to short-term survival in two-sample comparisons with identical proportions of long-term survivors." Broët P, Tubert-Bitter P, De Rycke Y, Moreau T (2003) 2003 Mar 30 ; 22(6) : 931-40


  5. "A theoretical analysis of query selection for collaborative filtering" S. Dasgupta, W. S. Lee, P. M. Long (2003) Machine Learning. 51 . 283-298


  6. "Alpha-tocopherol modulates the low density lipoprotein receptor of human HepG2 cells." Pal Sebely, Thomson Andrew M, Bottema Cynthia D K, Roach Paul D (2003) 2003 May 12 ; 2 : 3


  7. "An upper bound on the sample complexity of PAC learning halfspaces with respect to the uniform distribution" P. M. Long (2003) Information Processing Letters. 87(5) . 229-234


  8. "Apoptotic susceptibility of cancer cells selected for camptothecin resistance: gene expression profiling, functional analysis, and molecular interaction mapping" Reinhold WC, Kouros-Mehr H, Kohn KW, Maunakea AK, Lababidi S, Roschke A, Stover K, Alexander J, Pantazis P, Lance D MILLER, Edison Tak-Bun LIU, Kirsch IR, Urasaki Y, Pommier Y, Weinstein JN (2003) Cancer Res. 63(5) . 1000-11


  9. "Autoimmunity as the consequence of a spontaneous mutation in Rasgrp1." Layer K, Lin G, Nencioni A, Hu W, Schmucker A, Antov AN, Li X, Takamatsu S, Chevassut T, Dower NA, Stang SL, Beier D, Buhlmann J, Bronson RT, Elkon KB, Stone JC, Van Parijs L, Lim B (2003) Immunity 2003 Aug ; 19(2) : 243-55


  10. "Boosting and microarray data" P. M. Long, Vinsensius Berlian VEGA (2003) Machine Learning. 52(1) . 31-44


  11. "Breast cancer cell line proliferation blocked by the Src-related Rak tyrosine kinase" Meyer T, Xu L, Chang J, Edison Tak-Bun LIU, Craven RJ, Cance WG (2003) Int J Cancer. 104(2) . 139-46


  12. "Breast cancer classification and prognosis based on gene expression profiles from a population-based study" Sotiriou C, Soek Ying NEO, McShane L.M., Korn E.L., Long M. Philip, Jazaeri A., Martiat P., Fox S.B., Harris A.L., Edison Tak-Bun LIU (2003) Proc. Natl. Acad. Sci. USA. 100 (18) . 10393-10398


  13. "Chronic Progression of Tubulointerstitial Damage in Proteinuric Renal Disease is Mediated by Complement Activation: A Therapeutic Role for Complement Inhibitors" Hsu, Stephen I-Hong, Couser, W.G (2003) J Am Soc Nephrol. 14(Suppl 2) . S186-91


  14. "Classifications of Cancers by Expression Profiling" Edison Tak-Bun LIU (2003) Current Opinion in Genetics & Development. 13(1) . 97-103


  15. "Clinics in diagnostic imaging (87). Subcutaneous lipoma" Edison Tak-Bun LIU, Teo HE, Peh WC (2003) Singapore Med J. 44(7) . 375-9


  16. "Comment on" Fortunel NO, Otu HH, Ng HH, Chen J, Mu X, Chevassut T, Li X, Joseph M, Bailey C, Hatzfeld JA, Hatzfeld A, Usta F, Vega VB, Long PM, Libermann TA, Lim B (2003) Science 2003 Oct 17 ; 302(5644) : 393; author reply 393


  17. "Comment on `Stemness: Transcriptional Profiling of Embryonic and Adult Stem Cells' and `A Stem Cell Molecular Signature'" Nicolas O. Fortunel, Hasan Otu, Huck Hui NG, Chen, J., Mu, X., Chevassut, T., Li, X., Joseph M., Bailey C., Hatzfeld, J., Usta, F., Vinsensius Berlian VEGA, Long M. Philip, Towia Liberman, T., Bing LIM (2003) Science. 302 . 393


  18. "Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection." Ruan Yi Jun, Wei Chia Lin, Ee Ai Ling, Vega Vinsensius B, Thoreau Herve, Su Se Thoe Yun, Chia Jer-Ming, Ng Patrick, Chiu Kuo Ping, Lim Landri, Zhang Tao, Peng Chan Kwai, Lin Ean Oon Lynette, Lee Ng Mah, Yee Sin Leo, Ng Lisa F P, Chee Ren Ee, Stanton Lawrence W, Long Philip M, Liu Edison T (2003) Lancet 2003 May 24 ; 361(9371) : 1779-85


  19. "Compression of Functional Space in HLA-A Sequence Diversity" Zhao B, Png AEH, Ee Chee REN, Prasanna R KOLATKAR, Mathura VS, Sakharkar MK, Kangueane P (2003) Human Immunology. 64 . 718-728


  20. "Cracking the genome of the SARS virus. In: The New Global Threat- SARS and its Impacts. Editors: Koh, Plant and Lee" Lawrence STANTON (2003) World Scientific. . 221-242


  21. "Crystallization and preliminary X-ray crystallographic studies on the fungal immunomodulatory protein Fve from the golden needle mushroom (Flammulina velutipes)" S. V. Seow, I.-C. Kuo, P. Paaventhan, Prasanna R KOLATKAR, K. Y. Chua (2003) Acta. D59 . 1487-1489


  22. "Dragon ERE Finder ver. 2.0: A tool for accurate detection of estrogen response elements in vertebrate genomes" Bajic, V.B., Tan, S.L, Chong A., Tang S., Strom A., Gustafsson J.-A., Lin Chin Yo, Edison Tak-Bun LIU (2003) Nucleic Acid Res. 31 . 3605-3607


  23. "Enhanced expression of S-adenosylmethionine synthetase causes overproduction of actinorhodin in Streptomyces coelicolor A3(2)." Okamoto S, Lezhava A, Hosaka T, Okamoto-Hosoya Y, Ochi K (2003) l 2003 Jan ; 185(2) : 601-9


  24. "Expression of major HDL-associated anti-oxidant, PON-1 is gender-dependent and regulated during inflammation" Ali A.B, Zhang, Q, Lim, Y.K, Fang D, Retnam, L, Sai Kiang LIM (2003) Free Radicals in Biology and Medicine. 34(7) . 824-829


  25. "Freund adjuvant induces TLR2 but not TLR4 expression in the liver of mice" Sai Kiang LIM (2003) International Immunopharmacology. 3 . 115-118


  26. "Genetic background is an important determinant of metastatic potential" Hunter K, Welch DR, Edison Tak-Bun LIU (2003) Nat Genet. 34(1) . 23-4


  27. "HER-2/neu and topoisomerase II alpha--simultaneous drug targets in cancer" Jarvinen TA, Edison Tak-Bun LIU (2003) Comb Chem High Throughput Screen. 6(5) . 455-70


  28. "HER-2/neu and topoisomerase IIalpha in breast cancer" Jarvinen TA, Edison Tak-Bun LIU (2003) Breast Cancer Res Treat. 78(3) . 299-311


  29. "Identification of a locus for type I punctate palmoplantar keratoderma on chromosome 15q22-q24" A Martinez-Mir, A Zlotogorski, D Londono, D Gordon, A Grunn, E Uribe, L Honrev, I M Ruiz, N O Davalos, O Alayan, Jianjun LIU, TC Gilliam, J C Salas-Alanis, A M Christiano (2003) Journal of Medicine Genetics. 40(12) . 872-878


  30. "Identification of white spot syndrome virus latency-related genes in specific-pathogen-free shrimps by use of a microarray" Khadijah S, Soek Ying NEO, Hossain MS, Lance D MILLER, Sinnakarupan MATHAVAN, Kwang J (2003) J. Virology. 77(18) . 00


  31. "Lack of human IgE cross-reactivity between mite allergens Blo t 1 and Der p1" Nge Cheong, Siew Choo Soon, John Donnie A Ramos, I Chun Kuo, Prasanna R KOLATKAR, Bee Wah Lee, Kaw Yan Chua (2003) Allergy. 58 . 912-920


  32. "Molecular OncoDiagnostics: where we are and where we need to go" Edison Tak-Bun LIU (2003) J Clin Oncol. 21(11) . 2052-5


  33. "Molecular profiles of invasive mucinous and invasive ductal carcinomas of the breast, a molecular case study" Pusztai Lajos, Sotiriou Christos, Buchholz Thomas A, Meric Funda, Symmans W. Fraser, Esteva Francisco J, Sahin Aysegul, Edison Tak-Bun LIU, Hortobagyi Gabriel N (2003) Cancer Genet Cytogenet. 141(2) . 148-53


  34. "On the difficulty of approximately maximizing agreements" S. Ben-David, N. Eiron, P. M. Long (2003) Journal of Computer and System Sciences. 66(3) . 496-514


  35. "Oncogenes and Suppressor Genes: Genetic Control of Cancer" Edison Tak-Bun LIU (2003) Cecil Textbook of Medicine (22nd Edition) Editors: L. Goldman, and J. Claude Bennett, W.B. Saunders


  36. "Predicting RNA secondary structures with arbitrary pseudoknots by maximizing the number of stacking pairs." Ieong Samuel, Kao Ming-Yang, Lam Tak-Wah, Sung Wing-Kin, Yiu Siu-Ming (2003) J. Comput. Biol. 2003 ; 10(6) : 981-95


  37. "Reinforcement learning with immediate rewards and linear hypotheses" N. Abe, A. W. Biermann, P. M. Long (2003) Algorithmica. 37(4) . 263-293


  38. "SIFT: Predicting amino acid changes that affect protein function." Ng PC, Henikoff S (2003) Nucleic Acids Res 2003 Jul 1 ; 31(13) : 3812-4


  39. "Stem cells and angiogenesis" Que, J, Sai Kiang LIM (2003) (Book chapter, Cardiovascular Research: New Technologies, Methods and Applications)


  40. "Strategy for the design of custom cDNA microarrays" Lorenz MG, Cortes LM, Lorenz JJ, Edison Tak-Bun LIU (2003) Biotechniques. 34(6) . 1264-70


  41. "The proline-rich acidic protein is epigenetically regulated and inhibits growth of cancer cell lines." Zhang J, Wong H, Ramanan S, Cheong D, Leong A, Hooi SC (2003) Cancer Res 2003 Oct 15 ; 63(20) : 6658-65


  42. "The Rtf1 component of the Paf1 transcriptional elongation complex, is required for ubiquitination of histone H2B" Huck Hui NG, Dole, S, Struhl, K. (2003) J. Biol. Chem. (Accelerated Publication). 278 . 33625-33628


  43. "The virus that changed my world" Lisa Fong-Poh NG (2003) PLoS Biology. 1 . 310-312


  44. "The zinc finger-associated domain of the Drosophila transcription factor grauzone is a novel zinc-coordinating protein-protein interaction module." Jauch Ralf, Bourenkov Gleb P, Chung Ho Ryun, Urlaub Henning, Reidt Ulrich, Jäckle Herbert, Wahl Markus C (2003) Structure 2003 Nov ; 11(11) : 1393-402


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