Publications from 2006
  1. "(2006) Genomic Patterns of Pathogen Evolution Revealed by Comparison of Burkholderia pseudomallei, the Causative Agent of Melioidosis, to Avirulent Burkholderia thailandensis" Yiting Yu, H. Stanley Kim, Hui Hoon Chua, Chi Ho Lin, Siew Hoon Sim, Daoxun Lin, Alan Derr, Reinhard Engels, David DeShazer, Bruce Birren, William C. Nierman, Patrick Tan (2006) BMC Microbiology 6(1):46, 2006 May 26 [Epub ahead of print]


  2. "A genomics approach to understanding host response during dengue infection." Hibberd Martin L, Ling Ling, Tolfvenstam Thomas, Mitchell Wayne, Wong Chris, Kuznetsov Vladimir A, George Joshy, Ong Swee-Hoe, Ruan Yijun, Wei Chia L, Gu Feng, Fink Joshua, Yip Andy, Liu Wei, Schreiber Mark, Vasudevan Subhash G (2006) Novartis Found. Symp. 2006 ; 277 : 206-14; discussion 214-7, 251-3


  3. "A global map of p53 transcription-factor binding sites in the human genome." Wei Chia-Lin, Wu Qiang, Vega Vinsensius B, Chiu Kuo Ping, Ng Patrick, Zhang Tao, Shahab Atif, Yong How Choong, Fu YuTao, Weng Zhiping, Liu JianJun, Zhao Xiao Dong, Chew Joon-Lin, Lee Yen Ling, Kuznetsov Vladimir A, Sung Wing-Kin, Miller Lance D, Lim Bing, Liu Edison T, Yu Qiang, Ng Huck-Hui, Ruan Yijun (2006) Cell 2006 Jan 13 ; 124(1) : 207-19


  4. "A Machine Learning Strategy to Identify Exonic Candidate Binding Sites in Human Protein-coding Sequence" Thomas A. Down, Bernard Leong and Tim J. P. Hubbard (2006) BMC Bioinformatics 7:419, 2006 Sep 26 Epub ahead of print


  5. "A Modular Analysis of Breast Cancer Reveals A Novel Low-Grade Molecular Signature in Estrogen Receptor Positive Tumors." Kun Yu, Kumaresan Ganesan, Lance D. Miller and Patrick Tan (2006) Clinical Cancer Research 12:3288-3296, 2006 Jun 1


  6. "A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes." Miranda Kevin C, Huynh Tien, Tay Yvonne, Ang Yen-Sin, Tam Wai-Leong, Thomson Andrew M, Lim Bing, Rigoutsos Isidore (2006) Cell 2006 Sep 22 ; 126(6) : 1203-17


  7. "A Transforming Growth Factor β-induced Protein Stimulates Endocytosis and Is Up-regulated at the Immature State of Dendritic Cells" Weiping Cao, Patrick Tan, Chee How Lee, Haifeng Zhang, and Jinhua Lu (2006) BLOOD 107(7):2777-85, 2006 Apr 1


  8. "Algorithms for Combining Rooted Triplets into a Galled Phylogenetic Network" Jesper Jansson, Nguyen Bao Nguyen and Wing-Kin Sung (2006) SIAM Journal of Computing 35(5):1098-1121, 2006 Apr


  9. "Analysis of 14 LRRK2 mutations in Parkinson's Plus Syndromes and Late Onset Parkinson's Disease" Tan EK, Skipper L, Chua E, Shen H, Wong MC, Pavanni R, Bonnard C, Kolatkar P, Jian-Jun Liu. (2006) Mov Disord, 2006 Apr 6 [Epub ahead of print]


  10. "Apoptosis signal-regulating kinase 1 is a direct target of E2F1 and contributes to histone deacetylase inhibitor-induced apoptosis through positive feedback regulation of E2F1 apoptotic activity" Tan J, Zhuang L, Jiang X, Yang KK, Karuturi KM, Yu Q (2006) J Biol Chem. 281(15):10508-15, 2006 Apr 14


  11. "Application of advanced technologies in ageing research" Lim CA, Ng HH (2006) Mech Ageing Dev, 2006 Nov 16 [Epub ahead of print]


  12. "Bapx1 homeobox gene gain-of-function mice show preaxial polydactyly and activated Shh signaling in the developing limb" Tribioli, C., and T. Lufkin (2006) Developmental Dynamics 235, 2483-2492, 2006 Sep


  13. "CD14 promoter polymorphisms have no functional significance and are not associated with atopic phenotypes" Liang X, Cheung W, Heng CK, Liu J, Li CW, Lim B, Wang DY (2006) Pharmacogenet Genomics 16(4):229-36, 2006 Apr


  14. "Celecoxib reduces microvessel density in patients treated with nasopharyngeal carcinoma and induces changes in gene expression" Ross A. Soo, Jeanie Wu, Amit Aggarwal, Qian Tao, Wenson Hsieh, Thomas Putti, Kong B Tan, Wah L Soon, Yoke F Lai, Benjamin Mow, Stephen Hsu, Kwok S Loh, Luke Tan, Patrick Tan*, Boon-C Goh* (* equal contribution) (2006) Ann Oncol. 17(11):1625-30, 2006 Nov


  15. "cis-regulatory region analysis using BEARR." Vega Vinsensius Berlian (2006) Methods Mol. Biol. 2006 ; 338 : 119-27


  16. "Combinational application of surface plasmon resonance spectroscopy and quartz crystal microbalance for studying nuclear hormone receptor-response element interactions" Su X, Lin CY, O'Shea SJ, Teh HF, Peh WY, Thomsen JS (2006) Anal Chem 78(15):5552-8, 2006 Aug 1


  17. "Complex loci in mammalian genomes" Engström PG, Suzuki H, Ninomiya N, Akalin A, Sessa L, Lavorgna G, Brozzi A, Luzi L, Tan SL, Yang L, Kunarso G, Ng E, Batalov S, Kai C, Kawai J, Carninci P, Hayashizaki Y, Wells C, Bajic VB, Orlando V, Reid JF, Lenhard B, and Lipovich L. (2006) PLoS Genetics 2(4):e47, 2006 Apr


  18. "Comprehensive analysis of the ATM, CHEK2 and ERBB2 genes in relation to breast tumour characteristics and survival: a population-based case-control and follow-up study" Einarsdottir K, Rosenberg LU, Humphreys K, Bonnard C, Palmgren J, Li Y, Li Y, Chia KS, Liu ET, Hall P, Liu J, Wedren S. (2006) Breast Cancer Res. 8(6):R67, 2006 Nov 28 [Epub ahead of print]


  19. "Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression." Lam Siew Hong, Wu Yi Lian, Vega Vinsensius B, Miller Lance D, Spitsbergen Jan, Tong Yan, Zhan Huiqing, Govindarajan Kunde R, Lee Serene, Mathavan Sinnakarupan, Murthy Karuturi R Krishna, Buhler Donald R, Liu Edison T, Gong Zhiyuan (2006) Nat. Biotechnol. 2006 Jan ; 24(1) : 73-5


  20. "Derivation of Clinically Compliant MSCs from CD105+, CD24- Differentiated Human ESCs" Lian, Q., Lye, E., Yeo, K. S., Tan, E. K., Salto-Tellez, M., Liu, T. M., Palanisamy, N., El Oakley, R. M., Lee, E. H., Lim, B., and Lim, S. K. (2006) Stem Cells DOI: 10.1634/stemcells.2006-0420, 2006 Oct 19 [Epub ahead of print]


  21. "Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model." Broët Philippe, Richardson Sylvia (2006) Bioinformatics 2006 Apr 15 ; 22(8) : 911-8


  22. "Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs." Jacques PE, Rodrigue S, Gaudreau L, Goulet J, Brzezinski R (2006) BMC Bioinformatics 2006 ; 7 : 423 Epub 2006 Oct 2


  23. "Differential Friendly Neighbors algorithm for differential relationships-based gene selection and classification using Microarray data" Karuturi RKM, Wong S, Sung W-K, Miller LD. (2006) The Proc of the 2006 Intl Conf on Data Mining (DMIN’06), Jun 26-29, 2006


  24. "Dlx homeobox gene control of mammalian limb and craniofacial development" Kraus, P., and T. Lufkin (2006) American J Medical Genetics 140, 1366-1374, 2006 Jul 11


  25. "Dlx5 and Dlx6 homeobox genes are required for specification of the mammalian vestibular apparatus" Robledo, R.F., and T. Lufkin (2006) Genesis: J of Genetics and Development 44, 425-437, 2006 Sep


  26. "Early Dengue infection and outcome study (EDEN) - study design and preliminary findings." Low Jenny G H, Ooi Eng-Eong, Tolfvenstam Thomas, Leo Yee-Sin, Hibberd Martin L, Ng Lee-Ching, Lai Yee-Ling, Yap Grace S L, Li Chenny S C, Vasudevan Subhash G, Ong Adrian (2006) Ann. Acad. Med. Singap. 2006 Nov ; 35(11) : 783-9


  27. "Effect of ATM, CHEK2 and ERBB2 tagSNPs and haplotypes on endometrial cancer risk" Einarsdottir K, Humphreys K, Bonnard C, Li Y, Li Y, Chia KS, Liu ET, Hall P, Liu J, Wedren S. (2006) Hum Mol Genet, 2006 Dec 12 [Epub ahead of print]


  28. "Effect of raloxifene on bone mineral density in premenopausal women at increased risk of breast cancer" Eng-Wong J, Reynolds JC, Venzon D, Liewehr D, Gantz S, Danforth D, Liu ET, Chow C, Zujewski J. (2006) J Clin Endocrinol Metab. 91(10):3941-6, 2006 Jul 25 [Epub ahead of print]


  29. "Embryonic stem cells as a module for systems biology" Thomson et al (2006) Systems Biology Vol 2 ed Rigoutsos & Stephanopolous, 2006 Sep 10


  30. "Emergence of size-dependent networks on genome scale" Kuznetsov, VA (2006) Lecture Series on Computer and computational Sciences vol. 7, pp754-757, 2006


  31. "Establishing Clonal Cell Lines with Endothelial-Like Potential from CD9hi, SSEA-1- Cells in Embryonic Stem Cell-Derived Embryoid Bodies" Lian, Q., Yeo, K., Que, J., Tan, E., Yu, F., Yin, Y., Salto-Tellez, M., Oakley, R. M., and Lim, S. K. (2006) PLoS ONE 1(1) e6. doi:10.1371/journal.pone.0000006, 2006 Dec 20


  32. "Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions." Chua Hon Nian, Sung Wing-Kin, Wong Limsoon (2006) Bioinformatics 2006 Jul 1 ; 22(13) : 1623-30


  33. "Follow-Up Analysis of PSORS9 in 151 Chinese Families Confirmed the Linkage to 4q31-32 and Refined the Evidence to the Families of Early-Onset Psoriasis" KL Yan , W Huang, XJ Zhang, S Yang, YM Chen, FL Xiao, X Fan, M Gao, Y Cui, GL Zhang, LD Sun, PG Wang, JJ Chen, W Li, ZH Chen, ZM Wang, D Wang, KY Zhang, J Liu (2006) Journal of Investigative Dermatology doi:10.1038/sj.jid.5700506, 2006 Nov 30 [Epub ahead of print]


  34. "Gene expression preferentially regulated by tamoxifen in breast cancer cells and correlations with clinical outcome." Frasor Jonna, Chang Edmund C, Komm Barry, Lin Chin-Yo, Vega Vinsensius B, Liu Edison T, Miller Lance D, Smeds Johanna, Bergh Jonas, Katzenellenbogen Benita S (2006) Cancer Res. 2006 Jul 15 ; 66(14) : 7334-40


  35. "Genome-wide analysis of mammalian promoter architecture and evolution" Carninci P, Sandelin A, Lenhard B, Katayama S, Shimokawa K, Ponjavic J, Semple CA, Taylor MS, Engstrom PG, Frith MC, Forrest AR, Alkema WB, Tan SL, Plessy C, Kodzius R, Ravasi T, Kasukawa T, Fukuda S, Kanamori-Katayama M, Kitazume Y, Kawaji H, Kai C, Nakamura M, Konno H, Nakano K, Mottagui-Tabar S, Arner P, Chesi A, Gustincich S, Persichetti F, Suzuki H, Grimmond SM, Wells CA, Orlando V, Wahlestedt C, Liu ET, Harbers M, Kawai J, Bajic VB, Hume DA, Hayashizaki Y. (2006) Nat Genet. 38(6):626-35, 2006 Apr 28 [Epub ahead of print]


  36. "Genomewide expression profiling in the zebrafish embryo identifies target genes regulated by Hedgehog signaling during vertebrate development." Xu Jun, Srinivas Bhylahalli P, Tay Shang Yew, Mak Alicia, Yu Xianwen, Lee Serene G P, Yang Henry, Govindarajan Kunde R, Leong Bernard, Bourque Guillaume, Mathavan Sinnakarupan, Roy Sudipto (2006) Genetics 2006 Oct ; 174(2) : 735-52


  37. "Global map of growth-regulated gene expression in Burkholderia pseudomallei, the causative agent of melioidosis" Fiona Rodrigues, Mitali Sarkar-Tyson, Sarah V Harding, Siew Hoon Sim, Hui Hoon Chua, Chi Ho Lin, Xu Han, R Krishna M Karuturi, Ken Sung, Kun Yu, Wei Chen, Timothy P Atkins, Richard W Titball, and Patrick Tan (2006) Journal of Bacteriology p. 8178-8188, Vol. 188, No. 23, 2006 Dec


  38. "Global mapping of c-Myc binding sites and target gene networks in human B cells" 3. Karen I. Zeller, XiaoDong Zhao, Charlie W. H. Lee, Kuo Ping Chiu, Hong Sain Ooi, Fei Yao, Atif Shahab, How Choong Yong, YuTao Fu, Zhiping Weng, Vladimir A. Kuznetsov, Wing-Kin Sung, Yijun Ruan, Chi V. Dang, and Chia-Lin Wei (2006) Proc. Natl. Acad. Sci. USA 10.1073/pnas.0604129103, 2006 Nov 8


  39. "HERC5 is a novel interferon-induced HECT-type E3 protein ligase that mediates Type I interferon-induced ISGylation of protein targets" Wong, J., Yuh-Fen Pung, Newamn Sze, and Keh-Chuang, Chin (2006) Proceedings of the National Academy of Sciences USA 103(28), 10735-10740, 2006


  40. "High-throughput genomic technology in research and clinical management of breast cancer. Evolving landscape of genetic epidemiological studies" YL Low, S Wedrén and J Liu (2006) Breast Cancer Research 8(3):209, 2006 Jun 28 [Epub ahead of print]


  41. "Hormone-replacement therapy influences gene expression profiles and is associated with breast-cancer prognosis: a cohort study" Hall P, Ploner A, Bjohle J, Huang F, Lin CY, Liu ET, Miller LD, Nordgren H, Pawitan Y, Shaw P, Skoog L, Smeds J, Wedren S, Ohd J, Bergh J. (2006) BMC Med. 4(1):16, 2006 Jun 30 [Epub ahead of print]


  42. "Identification of Common Pathways Mediating Differentiation of Bone Marrow and Adipose Tissues Derived Human Mesenchymal Stem Cells (MSCs) into Three Mesenchymal Lineages" Liu TM, Martina M, Hutmacher DW, Hoi J, Hui P, Lee EH, Lim B. (2006) Stem Cells DOI: 10.1634/stemcells.2006-0394, 2006 Nov 9 [Epub ahead of print]


  43. "Identifying gene expression changes in breast cancer that distinguish early and late relapse among uncured patients." Broët Philippe, Kuznetsov Vladimir A, Bergh Jonas, Liu Edison T, Miller Lance D (2006) Bioinformatics 2006 Jun 15 ; 22(12) : 1477-85


  44. "In the pursuit of complexity: systems medicine in cancer biology" Liu ET, Kuznetsov VA, Miller LD. (2006) Cancer Cell. 9(4):245-7, 2006 Apr


  45. "Inferring direct regulatory targets from expression and genome location analyses: a comparison of transcription factor deletion and overexpression" Tang, L, Liu, X and Clarke, ND (2006) BMC Genomics 7: 215, 2006 Aug 22


  46. "Inferring phylogenetic relationships avoiding forbidden rooted triplets." He Ying-Jun, Huynh Trinh N D, Jansson Jesper, Sung Wing-Kin (2006) 2006 Feb ; 4(1) : 59-74


  47. "Intrinsic molecular signature of breast cancer in a population-based cohort of 412 patients" alza S, Hall P, Auer G, Bjohle J, Klaar S, Kronenwett U, Liu ET, Miller LD, Ploner A, Smeds J, Bergh J, Pawitan Y. (2006) Breast Cancer Res. 8(4):R34, 2006 Jul 17 [Epub ahead of print]


  48. "Ivshina AV, George J, Senko O, Mow B, Putti TC, Smeds J, Lindahl T, Pawitan Y, Hall P, Nordgren H, Wong JE, Liu ET, Bergh J, Kuznetsov VA, Miller LD." Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer (2006) Cancer Res. 66(21):10292-301, 2006 Nov 1


  49. "Linkage disequilibrium mapping of CHEK2: common variation and breast cancer risk" Einarsdottir K, Humphreys K, Bonnard C, Palmgren J, Iles MM, Sjolander A, Li Y, Chia KS, Liu ET, Hall P, Liu J, Wedren S. (2006) PLoS Med. 3(6):e168, 2006 May 9 [Epub ahead of print]


  50. "Liver X receptors regulate adrenal steroidogenesis and hypothalamic-pituitary-adrenal feedback" Nilsson M, Stulnig TM, Lin CY, Yeo AL, Nowotny P, Liu ET, Steffensen KR (2006) Mol Endocrinol 21(1):126-37, 2006 Sep 14 [Epub ahead of print]


  51. "Local gapped subforest alignment and its application in finding RNA structural motifs." Jansson Jesper, Hieu Ngo Trung, Sung Wing-Kin (2006) J. Comput. Biol. 2006 Apr ; 13(3) : 702-18


  52. "Localization of putative stem cells and four cell populations with different differentiation degree in mouse mammary anlagen." Han J, Cao S, Jin H, Liu Y, Wang M, Song J, Li N (2006) Histochem Cell Biol 2006 Jul ; 126(1) : 35-43 Epub 2006 Feb 3


  53. "Long-term room temperature storage of high-quality embryonic stem cell genomic DNA extracted with a simple and rapid procedure" Tribioli C, Lufkin T (2006) Journal of Biomolecular Techniques 17:249-251, 2006 Sep


  54. "LRRK2 G2019S founder haplotype in the Chinese population" Tan EK, Skipper L, Tan L, Liu JJ (2006) Mov Disord, 2006 Nov 2 [Epub ahead of print]


  55. "Mice and men: promoter properties" Bajic VB, Tan SL, Christoffels A, Schonbach C, Lipovich L, Yang L, Hofmann O, Kruger A, Hide W, Kai C, Kawai J, Hume DA, Carninci P, and Hayashizaki Y. (2006) PLoS Genetics. ; 2(4):e54, 2006 Apr


  56. "Mitogen-activated protein kinases interacting kinases are autoinhibited by a reprogrammed activation segment." Jauch Ralf, Cho Min-Kyu, Jäkel Stefan, Netter Catharina, Schreiter Kay, Aicher Babette, Zweckstetter Markus, Jäckle Herbert, Wahl Markus C (2006) EMBO J. 2006 Sep 6 ; 25(17) : 4020-32 Epub 2006 Aug 17


  57. "Multiplatform genome-wide identification and modeling of functional human estrogen receptor binding sites." Vega Vinsensius B, Lin Chin-Yo, Lai Koon Siew, Kong Say Li, Xie Min, Su Xiaodi, Teh Huey Fang, Thomsen Jane S, Yeo Ai Li, Sung Wing Kin, Bourque Guillaume, Liu Edison T (2006) Genome Biol. 2006 ; 7(9) : R82


  58. "Multiplex Sequencing of Paired-End Ditags (MS-PET): a Strategy for the Ultra-High-Throughput Analysis of Transcriptomes and Genomes" Ng, Patrick; Tan, Jack; Ooi, Hong Sain; Lee, Yen Ling; Chiu, Kuo Ping; Fullwood, Melissa; Srinivasan, Kandhadayar; Perbost, Clotilde; Du, Lei; Sung, Wing-Kin; Wei, Chia-Lin; Ruan, Yijun (2006) Nucleic Acids Research 34(12): e84 doi:10.1093/nar/gkl444, 2006, July 13


  59. "MYBBP1a is a novel repressor of NF-kappaB" Owen HR, Elser M, Cheung E, Gersbach M, Kraus WL, Hottiger MO (2006) Journal of Molecular Biology 366(3):725-36, 2006 Dec 15


  60. "p53 functions as a negative regulator of osteoblastogenesis, osteoblast-dependent osteoclastogenesis, and bone remodeling." Wang Xueying, Kua Hui-Yi, Hu Yuanyu, Guo Ke, Zeng Qi, Wu Qiang, Ng Huck-Hui, Karsenty Gerard, de Crombrugghe Benoit, Yeh James, Li Baojie (2006) J. Cell Biol. 2006 Jan 2 ; 172(1) : 115-25


  61. "Paired-End diTagging for Transcriptome and Genome Analysis" Patrick Ng, Chia-Lin Wei, Yijun Ruan, Fred M. Ausubel, Roger Brent, Robert E. Kingston, David D. Moore, J.G. Seidman, John A. Smith, Kevin Struhl (eds.); Virginia B. Chanda (Series Editor) (2006) In Current Protocols in Molecular Unit 21.12, 2006 July


  62. "Pareto-Gamma Statistics reveals global rescaling in transcriptomes of low and high aggressive breast cancer phenotypes" Chua A L-S, Ivshina AV, Kuznetsov VA (2006) Pattern Recognition in Bioinformatics (PRIB-2006) pp.49-59, 2006


  63. "PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data." Chiu KP, Wong CH, Chen Q, Ariyaratne P, Ooi HS, Wei CL, Sung WK, Ruan Y (2006) BMC Bioinformatics 2006 ; 7 : 390 Epub 2006 Aug 25


  64. "Polymorphisms in candidate genes: implications for the current treatment of Parkinson's disease" Skipper L, Liu J, Tan EK (2006) Expert Opinion on Pharmacotherapy Vol. 7, No. 7, Pages 849-855, 2006 May


  65. "Power Laws, Maximal Efficiency and the Turnover of Sports Managers" Toke Aidt, Bernard Leong, Daniel Sgroi and William Saslaw (2006) Physica A 370(2):697-703, 2006


  66. "Predicting the effects of amino acid substitutions on protein function." Ng PC, Henikoff S (2006) Annu Rev Genomics Hum Genet 2006 ; 7 : 61-80


  67. "Primate-specific endogenous cis-antisense transcription in the human 5q31 protocadherin gene cluster" Leonard LIPOVICH, Ravi Raj Vanisri, Say Li Kong, Chin-Yo Lin, Edison Tak-Bun LIU (2006) Journal of Molecular Evolution


  68. "PTPN22 and invasive bacterial disease." Chapman SJ, Khor CC, Vannberg FO, Maskell NA, Davies CW, Hedley EL, Segal S, Moore CE, Knox K, Day NP, Gillespie SH, Crook DW, Davies RJ, Hill AV (2006) Nat Genet 2006 May ; 38(5) : 499-500


  69. "Quantitative Profiling of Drug-Associated Proteomic Alterations by Combined 2-Nitrobenzenesulfenyl Chloride (NBS) Isotope Labeling and 2DE/MS Identification" Keli Ou, Djohan Kesuma, Kumaresan Ganesan, Kun Yu, Sou Yen Soon, Suet Ying Lee, Xin Pei Goh, Michelle Hooi, Wei Chen, Hiroyuki Jikuya, Tetsuo Ichikawa, Hiroki Kuyama, Ei-ichi Matsuo, Osamu Nishimura, and Patrick Tan (2006) J Proteome Res 5(9); 2194 - 2206, 2006 Sept


  70. "Recursive SVM feature selection and sample classification for proteomics mass-spectrometry data" Zhang, X, Lu, X, Shi, Q, Xu, X, Eastwood Hon-Chiu LEUNG, Miron, A, Liu, J.S, Wong, W.H (2006) BioMed Central Bioinformatics


  71. "Repression of HIP/RPL29 expression induces differentiation in colon cancer cells." Liu JJ, Huang BH, Zhang J, Carson DD, Hooi SC (2006) J Cell Physiol 2006 May ; 207(2) : 287-92


  72. "Restoring p53-mediated apoptosis in cancer cells: new opportunities for cancer therapy." Qiang Yu (2006) Drug Resistance Updates doi:10.1016/j.drup.2006.03.001, Online 2006 April 5


  73. "RNA viral community in human feces: prevalence of plant pathogenic viruses." Zhang Tao, Breitbart Mya, Lee Wah Heng, Run Jin-Quan, Wei Chia Lin, Soh Shirlena Wee Ling, Hibberd Martin L, Liu Edison T, Rohwer Forest, Ruan Yijun (2006) PLoS Biol. 2006 Jan ; 4(1) : e3


  74. "Sall4 interacts with Nanog and co-occupies Nanog genomic sites in embryonic stem cells." Wu Qiang, Chen Xi, Zhang Jinqiu, Loh Yuin-Han, Low Teck-Yew, Zhang Weiwei, Zhang Wensheng, Sze Siu-Kwan, Lim Bing, Ng Huck-Hui (2006) J. Biol. Chem. 2006 Aug 25 ; 281(34) : 24090-4


  75. "Sall4 modulates embryonic stem cell pluripotency and early embryonic development by the transcriptional regulation of Pou5f1." Zhang Jinqiu, Tam Wai-Leong, Tong Guo Qing, Wu Qiang, Chan Hsiao-Yun, Soh Boon-Seng, Lou Yuefei, Yang Jianchang, Ma Yupo, Chai Li, Ng Huck-Hui, Lufkin Thomas, Robson Paul, Lim Bing (2006) Nat. Cell Biol. 2006 Oct ; 8(10) : 1114-23


  76. "Smads orchestrate specific histone modifications and chromatin remodeling to activate transcription" Ross S, Cheung E, Petrakis TG, Howell M, Kraus WL, Hill CS (2006) The EMBO Journal 25, 4490–4502, 2006 Sep 21


  77. "Statistically Weighted Voting Analysis of Microarrays for Molecular Pattern Selection and Discovery Cancer Genotypes" V. A. Kuznetsov, O. V. Senko, L. D. Miller and Anna V. Ivshina (2006) Internet of computer sciences and network security (12) 73-83, 2006


  78. "Statistics of the numbers of transcripts and protein sequences encoded in the genome" Kuznetsov, VA (2006) Computational and Statistical Methods to Genomics pp.160-208, 2006


  79. "Systematic evaluation of association between the microsomal glutathione S-transferase 2 common variation and psoriasis vulgaris in Chinese population" Yang S, Yan KL, Zhang XJ, Xiao FL, Fan X, Gao M, Cui Y, Wang PG, Zhang GL, Sun LD, Wang ZM, Wang DZ, Zhang KY, Huang W, Liu J (2006) Arch Dermatol Res. 298(3):107-12, 2006 Jun 14 [Epub ahead of print]


  80. "The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction" Bourque G., Tesler G., Pevzner P.A (2006) Genome Research. Accepted (2006)


  81. "The LRRK2 Gly2385Arg variant is associated with Parkinson's disease: genetic and functional evidence" EK Tan, Y Zhao, Skipper L, MG Tan, A Di Fonzo, L Sun, S Fook-Chong, S Tang, E Chua, Y Yuen, L Tan, R Pavanni, MC Wong, P Kolatkar, CS Lu ,V Bonifati, JJ Liu (2006) Hum Genet, 2006 Sep 30 [Epub ahead of print]


  82. "The molecular basis of ageing in stem cells" Tam WL, Ang YS, Lim B. (2006) Mech Ageing Dev. doi:10.1016/j.mad.2006.11.020, 2006 Nov 27 [Epub ahead of print]


  83. "The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells." Loh Yuin-Han, Wu Qiang, Chew Joon-Lin, Vega Vinsensius B, Zhang Weiwei, Chen Xi, Bourque Guillaume, George Joshy, Leong Bernard, Liu Jun, Wong Kee-Yew, Sung Ken W, Lee Charlie W H, Zhao Xiao-Dong, Chiu Kuo-Ping, Lipovich Leonard, Kuznetsov Vladimir A, Robson Paul, Stanton Lawrence W, Wei Chia-Lin, Ruan Yijun, Lim Bing, Ng Huck-Hui (2006) Nat. Genet. 2006 Apr ; 38(4) : 431-40


  84. "The transcriptome of human oocytes." Kocabas Arif Murat, Crosby Javier, Ross Pablo J, Otu Hasan H, Beyhan Zeki, Can Handan, Tam Wai-Leong, Rosa Guilherme J M, Halgren Robert G, Lim Bing, Fernandez Emilio, Cibelli Jose Bernardo (2006) Proc. Natl. Acad. Sci. U.S.A. 2006 Sep 19 ; 103(38) : 14027-32


  85. "TLR3 ligation activates an antiviral response in human fetal astrocytes: a role for viperin/cig5" Rivieccio, M.A., Suh, H.S., Zhao, Y., Zhao, M.L., Chin, K. C., Lee, S.C., and Brosnan, C.F. (2006) Journal of Immunology 177, 4735-4741, 2006 Oct 1


  86. "Topological and Functional Discovery in a Gene Co-expression Meta-Network of Gastric Cancer" Amit Aggarwal, Dong Li Guo, Yujin Hoshida, Siu Tsan Yuen, Kent-Man Chu, Samuel So, Alex Boussioutas, Xin Chen, David Bowtell, Hiroyuki Aburatani, Suet Yi Leung, and Patrick Tan (2006) Cancer Research


  87. "Transcriptome kinetics of arsenic-induced adaptive response in zebrafish liver." Lam Siew Hong, Winata Cecilia Lanny, Tong Yan, Korzh Svetlana, Lim Wen San, Korzh Vladimir, Spitsbergen Jan, Mathavan Sinnakarupan, Miller Lance D, Liu Edison T, Gong Zhiyuan (2006) Physiol. Genomics 2006 Nov 27 ; 27(3) : 351-61


  88. "Whole genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection" Liu, X, Lee, C-K, Granek, JA, Clarke, ND and Lieb, JD (2006) Genome Research 16:1517-1528, 2006 Dec 16


  89. "Whole-genome genotyping of haplotype tag single nucleotide polymorphisms." Gunderson KL, Kuhn KM, Steemers FJ, Ng P, Murray SS, Shen R (2006) Pharmacogenomics 2006 Jun ; 7(4) : 641-8


  90. "Whole-genome genotyping." Gunderson KL, Steemers FJ, Ren H, Ng P, Zhou L, Tsan C, Chang W, Bullis D, Musmacker J, King C, Lebruska LL, Barker D, Oliphant A, Kuhn KM, Shen R (2006) Methods Enzymol 2006 ; 410 : 359-76


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