Publications from 2008
  1. "A core Klf circuitry regulates self-renewal of embryonic stem cells." Jiang Jianming, Chan Yun-Shen, Loh Yuin-Han, Cai Jun, Tong Guo-Qing, Lim Ching-Aeng, Robson Paul, Zhong Sheng, Ng Huck-Hui (2008) Nat. Cell Biol. 2008 Mar ; 10(3) : 353-60


  2. "A genome-wide association study in 574 schizophrenia trios using DNA pooling." Kirov G, Zaharieva I, Georgieva L, Moskvina V, Nikolov I, Cichon S, Hillmer A, Toncheva D, Owen M J, O\'Donovan M C (2008) Mol. Psychiatry 2008 Mar 11 ; : Epub 2008 Mar 11


  3. "A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters." Badis Gwenael, Chan Esther T, van Bakel Harm, Pena-Castillo Lourdes, Tillo Desiree, Tsui Kyle, Carlso n Clayton D, Gossett Andrea J, Hasinoff Michael J, Warren Christopher L, Gebbia Marinella, Talukder Shaheynoor, Yang Ally, Mnaimneh Sanie, Terterov Dimitri, Coburn David, Li Yeo Ai, Yeo Zhen Xuan, Clarke Neil D, Lieb Jason D, Ansari Aseem Z, Nislow Corey, Hughes Timothy R (2008) Mol. Cell 2008 Dec 26 ; 32(6) : 878-87


  4. "A precisely regulated gene expression cassette potently modulates metastasis and survival in multiple solid cancers." Yu Kun, Ganesan Kumaresan, Tan Lay Keng, Laban Mirtha, Wu Jeanie, Zhao Xiao Dong, Li Hongmin, Leung Carol Ho Wing, Zhu Yansong, Wei Chia Lin, Hooi Shing Chuan, Miller Lance, Tan Patrick (2008) PLoS Genet. 2008 ; 4(7) : e1000129


  5. "A two-step antibody strategy for surface plasmon resonance spectroscopy detection of protein-DNA interactions in nuclear extracts" Su X, Neo SJ, Peh WY, Thomsen JS (2008) Anal Biochem. 376(1):137-43


  6. "Activation of apoptosis by 1-hydroxy-5,7-dimethoxy-2-naphthalene-carboxaldehyde, a novel compound from Aegle marmelos." Subramaniam D, Giridharan P, Murmu N, Shankaranarayanan NP, May R, Houchen CW, Ramanujam RP, Balakrishnan A, Vishwakarma RA, Anant S (2008) Cancer Res 2008 Oct 15 ; 68(20) : 8573-81


  7. "Amplification and overexpression of PPFIA1, a putative 11q13 invasion suppressor gene, in head and neck squamous cell carcinoma" Tan KD, Zhu Y, Tan HK, Rajasegaran V, Aggarwal A, Wu J, Wu HY, Hwang J, Lim DT, Soo KC, Tan P (2008) Genes Chromosomes Cancer. 47(4):353-62


  8. "An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data." Xu Han, Wei Chia-Lin, Lin Feng, Sung Wing-Kin (2008) Bioinformatics 2008 Oct 15 ; 24(20) : 2344-9


  9. "Association analysis of CFH, C2, BF, and HTRA1 gene polymorphisms in Chinese patients with polypoidal choroidal vasculopathy." Lee Kelvin Y, Vithana Eranga N, Mathur Ranjana, Yong Victor H, Yeo Ian Y, Thalamuthu Anbupalam, Lee Mun-Wai, Koh Adrian H, Lim Marcus C, How Alicia C, Wong Doric W, Aung Tin (2008) Invest. Ophthalmol. Vis. Sci. 2008 Jun ; 49(6) : 2613-9


  10. "Association of LOXL1 Gene Polymorphisms with Pseudoexfoliation in the Japanese" Mineo Ozaki, Kelvin YC Lee, Eranga N Vithana, Victor H Yong, Anbupalam Thalamuthu, Takanori Mizoguchi, Anandalakshmi Venkatraman, Tin Aung (2008) Invest Ophthalmol Vis Sci. 3976-80. Epub 2008 Apr 30


  11. "Association of TNFSF15 with Crohn's disease in Koreans." Yang Suk-Kyun, Lim Jiyoung, Chang Hye-Sook, Lee Inchul, Li Yuqing, Liu Jianjun, Song Kyuyoung (2008) Am. J. Gastroenterol. 2008 Jun ; 103(6) : 1437-42 Epub 2008 Apr 16


  12. "Automated Identification of Chromosome Segments Involved in Translocations by Combining Spectral Karyotyping and Banding Analysis" Benoît Legrand, Che Sau Chang, Sim-Heng Ong, Soek-Ying Neo, and Nallasivam Palanisamy (2008) IEEE Transactions On Systems, Man, And Cybernetics — Part A: Systems and Humans, Vol. 38, No. 6


  13. "Bevacizumab and rapamycin induce growth suppression in mouse models of hepatocellular carcinoma" Huynh H, Chow PK, Palanisamy N, Salto-Tellez M, Goh BC, Lee CK, Somani A, Lee HS, Kalpana R, Yu K, Tan PH, Wu J, Soong R, Lee MH, Hor H, Soo KC, Toh HC, Tan P (2008) J Hepatol. 49(1):52-60


  14. "Biodiversity and biogeography of phages in modern stromatolites and thrombolites." Desnues Christelle, Rodriguez-Brito Beltran, Rayhawk Steve, Kelley Scott, Tran Tuong, Haynes Matthew, Liu Hong, Furlan Mike, Wegley Linda, Chau Betty, Ruan Yijun, Hall Dana, Angly Florent E, Edwards Robert A, Li Linlin, Thurber Rebecca Vega, Reid R Pamela, Siefert Janet, Souza Valeria, Valentine David L, Swan Brandon K, Breitbart Mya, Rohwer Forest (2008) Nature 2008 Mar 20 ; 452(7185) : 340-3 Epub 2008 Mar 2


  15. "Cancer gene silencing without DNA hypermethylation" Qiang Yu (2008) Epigenetics. 3(6):315


  16. "CD209 genetic polymorphism and tuberculosis disease." Vannberg FO, Chapman SJ, Khor CC, Tosh K, Floyd S, Jackson-Sillah D, Crampin A, Sichali L, Bah B, Gustafson P, Aaby P, McAdam KP, Bah-Sow O, Lienhardt C, Sirugo G, Fine P, Hill AV (2008) PLoS One 2008 ; 3(1) : e1388


  17. "Characterization of rainbow trout CHK2 and its potential as a genotoxicity biomarker." Steinmoeller Jessica D, Fujiki Kazuhiro, Arya Aman, Müller Kirsten M, Bols Niels C, Dixon Brian, Duncker Bernard P (2008) Comp. Biochem. Physiol. C Toxicol. Pharmacol. 2008 Nov 24 ; :


  18. "Common variants at CD40 and other loci confer risk of rheumatoid arthritis." Raychaudhuri Soumya, Remmers Elaine F, Lee Annette T, Hackett Rachel, Guiducci Candace, Burtt Noël P, Gianniny Lauren, Korman Benjamin D, Padyukov Leonid, Kurreeman Fina A S, Chang Monica, Catanese Joseph J, Ding Bo, Wong Sandra, van der Helm-van Mil Annette H M, Neale Benjamin M, Coblyn Jonathan, Cui Jing, Tak Paul P, Wolbink Gert Jan, Crusius J Bart A, van der Horst-Bruinsma Irene E, Criswell Lindsey A, Amos Christopher I, Seldin Michael F, Kastner Daniel L, Ardlie Kristin G, Alfredsson Lars, Costenbader Karen H, Altshuler David, Huizinga Tom W J, Shadick Nancy A, Weinblatt Michael E, de Vries Niek, Worthington Jane, Seielstad Mark, Toes Rene E M, Karlson Elizabeth W, Begovich Ann B, Klareskog Lars, Gregersen Peter K, Daly Mark J, Plenge Robert M (2008) Nat. Genet. 2008 Oct ; 40(10) : 1216-23 Epub 2008 Sep 14


  19. "Compressed indexing and local alignment of DNA." Lam T W, Sung W K, Tam S L, Wong C K, Yiu S M (2008) Bioinformatics 2008 Mar 15 ; 24(6) : 791-7


  20. "Computational tools for the analysis of rearrangements in mammalian genomes." Bourque Guillaume, Tesler Glenn (2008) Methods Mol. Biol. 2008 ; 452 : 431-55


  21. "Computational tools for the analysis of rearrangements in mammalian genomes." Tesler Glenn, Bourque Guillaume (2008) Methods Mol. Biol. 2008 ; 422 : 145-70


  22. "Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells." Xie Dan, Cai Jun, Chia Na-Yu, Ng Huck H, Zhong Sheng (2008) Genome Res. 2008 Aug ; 18(8) : 1325-35


  23. "Cryopreservation of Neurospheres derived from Human Glioblastoma Multiforme." Chong Yuk Kien, Toh Tan Boon, Zaiden Norazean, Poonepalli Anuradha, Leong Siew Hong, Ee Ling Ong Catherine, Yu Yiting, Tan Patrick B, See Siew Ju, Ng Wai Hoe, Ng Ivan, Hande Manoor P, Kon Oi Lian, Ang Beng Ti, Tang Carol (2008) Stem Cells 2008 Oct 16 ; :


  24. "Crystal structure and DNA binding of the homeodomain of the stem cell transcription factor Nanog." Jauch Ralf, Ng Calista Keow Leng, Saikatendu Kumar Singh, Stevens Raymond C, Kolatkar Prasanna R (2008) J. Mol. Biol. 2008 Feb 22 ; 376(3) : 758-70 Epub 2007 Dec 4


  25. "Cytogenetic studies of 24 renal epithelial tumors with von Hippel-Lindau and fragile histidine triad protein expression correlation." Gayrard Nathalie, Cacheux Valère, Iborra François, Mourad Georges, Argilés Angel (2008) Arch. Pathol. Lab. Med. 2008 Jun ; 132(6) : 965-73


  26. "DACT3 is an epigenetic regulator of Wnt/beta-catenin signaling in colorectal cancer and is a therapeutic target of histone modifications." Jiang Xia, Tan Jing, Li Jingsong, Kivimäe Saul, Yang Xiaojing, Zhuang Li, Lee Puay Leng, Chan Mark T W, Stanton Lawrence W, Liu Edison T, Cheyette Benjamin N R, Yu Qiang (2008) Cancer Cell 2008 Jun ; 13(6) : 529-41


  27. "Decision tree algorithms predict the diagnosis and outcome of dengue Fever in the early phase of illness." Tanner Lukas, Schreiber Mark, Low Jenny G H, Ong Adrian, Tolfvenstam Thomas, Lai Yee Ling, Ng Lee Ching, Leo Yee Sin, Thi Puong Le, Vasudevan Subhash G, Simmons Cameron P, Hibberd Martin L, Ooi Eng Eong (2008) PLoS Negl Trop Dis 2008 ; 2(3) : e196


  28. "Dengue virus regulates type I interferon signalling in a strain-dependent manner in human cell lines." Umareddy Indira, Tang Kin Fai, Vasudevan Subhash G, Devi Shamala, Hibberd Martin L, Gu Feng (2008) J. Gen. Virol. 2008 Dec ; 89(Pt 12) : 3052-62


  29. "Detailed characterization of the mouse embryonic stem cell transcriptome reveals novel genes and intergenic splicing associated with pluripotency" Kunarso G, Wong KY, Stanton LW, Lipovich L (2008) BMC Genomics. 9:155


  30. "Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programs." Jeong, J., X. Li, R.J. McEvilly, M.G. Rosenfeld, T. Lufkin and J.L. Rubenstein (2008) Development 135(17):2905-16


  31. "Dopaminergic mutations: within-family association and linkage in multiplex alcohol dependence families." Hill Shirley Y, Hoffman Eric K, Zezza Nicholas, Thalamuthu Anbupalam, Weeks Daniel E, Matthews Abigail G, Mukhopadhyay Indranil (2008) Am. J. Med. Genet. B Neuropsychiatr. Genet. 2008 Jun 5 ; 147B(4) : 517-26


  32. "Dual regulation of Cdc25A by Chk1 and p53-ATF3 in DNA replication checkpoint control." Anastasis R.Demidova, Mei Yee Aau, Li Zhuang, Qiang Yu (2008) J Biol. Chem. doi/1074.


  33. "Effects of Ectopic Nanog and Oct4 Overexpression on Mesenchymal Stem Cells." Liu Tong Ming, Wu Ying Nan, Guo Xi Min, James Hoi Po Hui, Lee Eng Hin, Lim Bing (2008) Stem Cells Dev. 2008 Dec 22 ; :


  34. "Estrogen receptor regulation of carbonic anhydrase XII through a distal enhancer in breast cancer" Barnett DH, Sheng S, Charn TH, Waheed A, Sly WS, Lin CY, Liu ET, Katzenellenbogen BS (2008) Cancer Res. 68(9):3505-15


  35. "Evolution of the mammalian transcription factor binding repertoire via transposable elements." Bourque Guillaume, Leong Bernard, Vega Vinsensius B, Chen Xi, Lee Yen Ling, Srinivasan Kandhadayar G, Chew Joon-Lin, Ruan Yijun, Wei Chia-Lin, Ng Huck Hui, Liu Edison T (2008) Genome Res. 2008 Oct 3 ; :


  36. "FTO variants are associated with obesity in the Chinese and Malay populations in Singapore." Tan Jonathan T, Dorajoo Rajkumar, Seielstad Mark, Sim Xue Ling, Ong Rick Twee-Hee, Chia Kee Seng, Wong Tien Yin, Saw Seang Mei, Chew Suok Kai, Aung Tin, Tai E-Shyong (2008) Diabetes 2008 Oct ; 57(10) : 2851-7 Epub 2008 Jul 3


  37. "Functional analysis of a cell cycle-associated, tumor-suppressive gene, protein tyrosine phosphatase receptor type G, in nasopharyngeal carcinoma." Cheung Arthur Kwok Leung, Lung Hong Lok, Hung Siu Chun, Law Evan Wai Lok, Cheng Yue, Yau Wing Lung, Bangarusamy Dhinoth Kumar, Miller Lance D, Liu Edison Tak-Bun, Shao Jian-Yong, Kou Chang-Wei, Chua Daniel, Zabarovsky Eugene R, Tsao Sai Wah, Stanbridge Eric J, Lung Maria Li (2008) Cancer Res. 2008 Oct 1 ; 68(19) : 8137-45


  38. "Functional genomics of cancer." Liu Edison T (2008) Curr. Opin. Genet. Dev. 2008 Jun ; 18(3) : 251-6 Epub 2008 Aug 28


  39. "Genetic association and expression studies indicate a role of toll-like receptor 8 in pulmonary tuberculosis." Davila Sonia, Hibberd Martin L, Hari Dass Ranjeeta, Wong Hazel E E, Sahiratmadja Edhyana, Bonnard Carine, Alisjahbana Bachti, Szeszko Jeffrey S, Balabanova Yanina, Drobniewski Francis, van Crevel Reinout, van de Vosse Esther, Nejentsev Sergey, Ottenhoff Tom H M, Seielstad Mark (2008) PLoS Genet. 2008 Oct ; 4(10) : e1000218


  40. "Genetic variation in an individual human exome." Ng PC, Levy S, Huang J, Stockwell TB, Walenz BP, Li K, Axelrod N, Busam DA, Strausberg RL, Venter JC (2008) PLoS Genet 2008 ; 4(8) : e1000160


  41. "Genome-wide copy number alterations detection in fresh frozen and matched FFPE samples using SNP 6.0 arrays." Tuefferd Marianne, De Bondt An, Van Den Wyngaert Ilse, Talloen Willem, Verbeke Tobias, Carvalho Benilton, Clevert Djork-Arne, Alifano Marco, Raghavan Nandini, Amaratunga Dhammika, Göhlmann Hinrich, Broët Philippe, Camilleri-Broët Sophie (2008) Genes Chromosomes Cancer 2008 Nov ; 47(11) : 957-64


  42. "Genomewide expression analysis in zebrafish mind bomb alleles with pancreas defects of different severity identifies putative Notch responsive genes." Hegde Ashok, Qiu Nick Chuanxin, Qiu Xuehui, Ho Steven Hao-Kee, Tay Kenny Qi-Ye, George Joshy, Ng Felicia Soo Lee, Govindarajan Kunde Ramamoorthy, Gong Zhiyuan, Mathavan Sinnakaruppan, Jiang Yun-Jin (2008) PLoS ONE 2008 ; 3(1) : e1479


  43. "Genomic loss of microRNA-101 leads to overexpression of histone methyltransferase EZH2 in cancer." Varambally Sooryanarayana, Cao Qi, Mani Ram-Shankar, Shankar Sunita, Wang Xiaosong, Ateeq Bushra, Laxman Bharathi, Cao Xuhong, Jing Xiaojun, Ramnarayanan Kalpana, Brenner J Chad, Yu Jindan, Kim Jung H, Han Bo, Tan Patrick, Kumar-Sinha Chandan, Lonigro Robert J, Palanisamy Nallasivam, Maher Christopher A, Chinnaiyan Arul M (2008) Science 2008 Dec 12 ; 322(5908) : 1695-9


  44. "Genomics takes hold in Asia. Interview by David Cyranoski." Liu Edison (2008) Nature 2008 Nov 6 ; 456(7218) : 12


  45. "Germline Polymorphisms as Modulators of Cancer Phenotypes" Patrick Tan (2008) BMC Med. 6:27


  46. "Gut flora, Toll-like receptors and nuclear receptors: a tripartite communication that tunes innate immunity in large intestine." Lundin Annelie, Bok Chek Mei, Aronsson Linda, Björkholm Britta, Gustafsson Jan-Ake, Pott Sebastian, Arulampalam Velmurugesan, Hibberd Martin, Rafter Joseph, Pettersson Sven (2008) Cell. Microbiol. 2008 May ; 10(5) : 1093-103


  47. "Heterogeneity of breast cancer associations with five susceptibility loci by clinical and pathological characteristics." Garcia-Closas Montserrat, Hall Per, Nevanlinna Heli, Pooley Karen, Morrison Jonathan, Richesson Douglas A, Bojesen Stig E, Nordestgaard Børge G, Axelsson Christen K, Arias Jose I, Milne Roger L, Ribas Gloria, González-Neira Anna, Benítez Javier, Zamora Pilar, Brauch Hiltrud, Justenhoven Christina, Hamann Ute, Ko Yon-Dschun, Bruening Thomas, Haas Sus anne, Dörk Thilo, Schürmann Peter, Hillemanns Peter, Bogdanova Natalia, Bremer Michael, Karstens Johann Hinrich, Fagerholm Rainer, Aaltonen Kirsimari, Aittomäki Kristiina, von Smitten Karl, Blomqvist Carl, Mannermaa Arto, Uusitupa Matti, Eskelinen Matti, Tengström Maria, Kosma Veli-Matti, Kataja Vesa, Chenevix-Trench Georgia, Spurdle Ama nda B, Beesley Jonathan, Chen Xiaoqing, Australian Ovarian Cancer Management Group Kathleen Cuningham Foundation Consortium For Research Into Familial Breast Cancer Devilee Peter, van Asperen Christi J, Jacobi Catharina E, Tollenaar Rob A E M, Huijts Petra E A, Klijn Jan G M, Chang-Claude Jenny, Kropp Silke, Slanger Tracy, Flesch-Janys Dieter, Mutschelknauss Elke, Salazar Ramona, Wang-Gohrke Shan, Couch Fergus, Goode Ellen L, Olson Janet E, Vachon Celine, Fredericksen Zachary S, Giles Graham G, Baglietto Laura, Severi Gianluca, Hopper John L, English Dallas R, Southey Melissa C, Haiman Christopher A, Henderson Brian E, Kolonel Laurence N, Le Marchand Loic, Stram Daniel O, Hunter David J, Hankinson Susan E, Cox David G, Tamimi Rulla, Kraft Peter, Sherman Mark E, Chanock Stephen J, Lissowska Jolanta, Brinton Louise A, Peplonska Beata, Klijn Jan G M, Hooning Maartje J, Meijers-Heijboer Han, Collee J Margriet, van den Ouweland Ans, Uitterlinden Andre G, Liu Jianjun, Lin Low Yen, Yuqing Li, Humphreys Keith, Czene Kamila, Cox Angela, Balasubramanian Sabapathy P, Cross Simon S, Reed Malcolm W R, Blows Fiona, Driver Kristy, Dunning Alison, Tyrer Jonathan, Ponder Bruce A J, Sangrajrang Suleeporn, Brennan Paul, McKay James, Odefrey Fabrice, Gabrieau Valerie, Sigurdson Alice, Doody Michele, Struewing Jeffrey P, Alexander Bruce, Easton Douglas F, Pharoah Paul D (2008) PLoS Genet. 2008 Apr ; 4(4) : e1000054


  48. "Human-specific gain of function in a developmental enhancer." Prabhakar Shyam, Visel Axel, Akiyama Jennifer A, Shoukry Malak, Lewis Keith D, Holt Amy, Plajzer-Fric k Ingrid, Morrison Harris, Fitzpatrick David R, Afzal Veena, Pennacchio Len A, Rubin Edward M, Noonan James P (2008) Science 2008 Sep 5 ; 321(5894) : 1346-50


  49. "Identification of tuberculosis susceptibility genes with human macrophage gene expression profiles." Thuong Nguyen Thuy Thuong, Dunstan Sarah J, Chau Tran Th i Hong, Thorsson Vesteinn, Simmons Cameron P, Quyen Nguyen Than Ha, Thwaites Guy E, Thi Ngoc Lan Nguyen, Hibberd Martin, Teo Yik Y, Seielstad Mark, Aderem Alan, Farrar Jeremy J, Hawn Thomas R (2008) PLoS Pathog. 2008 Dec ; 4(12) : e1000229


  50. "Impaired performance of FDR-based strategies in whole-genome association studies when SNPs are excluded prior to the analysis." Marenne Gaëlle, Dalmasso Cyril, Perdry Hervé, Génin Emmanuelle, Broët Philippe (2008) Genet. Epidemiol. 2008 Jul 10 ; :


  51. "Individual genomes instead of race for personalized medicine." Ng PC, Zhao Q, Levy S, Strausberg RL, Venter JC (2008) Clin Pharmacol Ther 2008 Sep ; 84(3) : 306-9


  52. "Influence of activation state of ErbB-2 (HER-2) on response to adjuvant cyclophosphamide, doxorubicin, and fluorouracil for stage II, node-positive breast cancer: study 8541 from the Cancer and Leukemia Group B" DiGiovanna MP, Stern DF, Edgerton S, Broadwater G, Dressler LG, Budman DR, Henderson IC, Norton L, Liu ET, Muss HB, Berry DA, Hayes DF, Thor AD. (2008) J Clin Oncol. 26(14):2364-72. Epub 2008 Apr 7


  53. "Inhibition of gastric cancer invasion and metastasis by PLA2G2A, a novel beta-catenin/TCF target gene" Ganesan K, Ivanova T, Wu Y, Rajasegaran V, Wu J, Lee MH, Yu K, Rha SY, Chung HC, Ylstra B, Meijer G, Lian KO, Grabsch H, Tan P (2008) Cancer Res. 68(11):4277-86


  54. "Integration of external signaling pathways with the core transcriptional network in embryonic stem cells." Chen Xi, Xu Han, Yuan Ping, Fang Fang, Huss Mikael, Vega Vinsensius B, Wong Eleanor, Orlov Yuriy L, Zhang Weiwei, Jiang Jianming, Loh Yuin-Han, Yeo Hock Chuan, Yeo Zhen Xuan, Narang Vipin, Govindarajan Kunde Ramamoorthy, Leong Bernard, Shahab Atif, Ruan Yijun, Bourque Guillaume, Sung Wing-Kin, Clarke Neil D, Wei Chia-Lin, Ng Huck-Hui (2008) Cell 2008 Jun 13 ; 133(6) : 1106-17


  55. "Integrative genomics identifies RAB23 as an invasion mediator gene in diffuse-type gastric cancer" Hou Q, Wu YH, Grabsch H, Zhu Y, Leong SH, Ganesan K, Cross D, Tan LK, Tao J, Gopalakrishnan V, Tang BL, Kon OL, Tan P (2008) Cancer Res. 68(12):4623-30


  56. "LOMA: a fast method to generate efficient tagged-random primers despite amplification bias of random PCR on pathogens." Lee Wah Heng, Wong Christopher W, Leong Wan Yee, Miller Lance D, Sung Wing Kin (2008) BMC Bioinformatics 2008 ; 9 : 368


  57. "MicroRNA-134 modulates the differentiation of mouse embryonic stem cells, where it causes post-transcriptional attenuation of Nanog and LRH1." Tay Yvonne M-S, Tam Wai-Leong, Ang Yen-Sin, Gaughwin Philip M, Yang Henry, Wang Weijia, Liu Rubing, George Joshy, Ng Huck-Hui, Perera Ranjan J, Lufkin Thomas, Rigoutsos Isidore, Thomson Andrew M, Lim Bing (2008) Stem Cells 2008 Jan ; 26(1) : 17-29


  58. "MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation." Tay Yvonne, Zhang Jinqiu, Thomson Andrew M, Lim Bing, Rigoutsos Isidore (2008) Nature 2008 Sep 17 ; :


  59. "Molecular analysis of CHX10 and MFRP in Chinese subjects with primary angle closure glaucoma and short axial length eyes" Tin Aung, Marcus C.C. Lim, Tina T.L. Wong, Anbupalam Thalamuthu, Victor H.K. Yong, Divya Venkataraman, Anandalakshmi Venkatraman, Paul T.K. Chew, Eranga N. Vithana (2008) Mol Vis. 14:1313-8


  60. "Molecular framework underlying pluripotency." Loh Yuin-Han, Ng Jia-Hui, Ng Huck-Hui (2008) Cell Cycle 2008 Apr 1 ; 7(7) : 885-91


  61. "Monochromosome transfer and microarray analysis identify a critical tumor-suppressive region mapping to chromosome 13q14 and THSD1 in esophageal carcinoma" Ko JM, Chan PL, Yau WL, Chan HK, Chan KC, Yu ZY, Kwong FM, Miller LD, Liu ET, Yang LC, Lo PH, Stanbridge EJ, Tang JC, Srivastava G, Tsao SW, Law S, Lung ML. (2008) Mol Cancer Res. 6(4):592-603


  62. "MotifVoter: a novel ensemble method for fine-grained integration of generic motif finders." Wijaya Edward, Yiu Siu-Ming, Son Ngo Thanh, Kanagasabai Rajaraman, Sung Wing-Kin (2008) Bioinformatics 2008 Oct 15 ; 24(20) : 2288-95


  63. "No evidence that GATA3 rs570613 SNP modifies breast cancer risk." Johnatty Sharon E, Couch Fergus J, Fredericksen Zachary, Tarrell Robert, Spurdle Amanda B, Beesley Jonathan, Chen Xiaoqing, kConFab Investigators AOCS Group The Swedish BRCA1 and BRCA2 Study Collaborators Gschwantler-Kaulich Daphne, Singer Christian F, Fuerhauser Christine, Fink-Retter Anneliese, Domchek Susan M, Nathanson Katherine L, Pankratz Vernon S, Lindor Noralane M, Godwin Andrew K, Caligo Maria A, Hopper John, Southey Melissa C, Giles Graham G, Justenhoven Christina, Brauch Hiltrud, Ha mann Ute, Ko Yon-Dschun, Heikkinen Tuomas, Aaltonen Kirsimari, Aittomäki Kristiina, Blomqvist Carl, Nevanlinna Heli, Hall Per, Czene Kamila, Liu Jianjun, Peock Susan, Cook Margaret, Platte Radka, Gareth Evans D, Lalloo Fiona, Eeles Rosalind, Pichert Gabriella, Eccles Diana, Davidson Rosemarie, Cole Trevor, Cook Jackie, Douglas Fiona, Chu Carol, Hodgson Shirley, Paterson Joan, Hogervorst Frans B L, Rookus Matti A, Seynaeve Caroline, Wijnen Juul, Vreeswijk Maaike, Ligtenberg Marjolijn, van der Luijt Rob B, van Os Theo A M, Gille Hans J P, Blok Marinus J, HEBON Issacs Claudine, Humphreys Manjeet K, McGuffog Lesley, Healey Sue, Sinilnikova Olga, Antoniou Antonis C, Easton Douglas F, Chenevix-Trench Georgia, on behalf of the Breast Cancer Association Consortium and the Consortium of Investigators of Modifiers of BRCA1/2 (2008) Breast Cancer Res. Treat. 2008 Dec 11 ; :


  64. "Numb mediates the interaction between Wnt and Notch to modulate primitive erythropoietic specification from the hemangioblast." Cheng X, Huber TL, Chen VC, Gadue P, Keller GM (2008) [Epub ahead of print]


  65. "Patients With Acute Myeloid Leukemia and RAS Mutations Benefit Most From Postremission High-Dose Cytarabine: A Cancer and Leukemia Group B Study" Neubauer A, Maharry K, Mrózek K, Thiede C, Marcucci G, Paschka P, Mayer RJ, Larson RA, Liu ET, Bloomfield CD (2008) Journal of Clinical Oncology. 10.1200/JCO.2007.14.0418


  66. "Periodic re-emergence of endemic strains with strong epidemic potential-a proposed explanation for the 2004 Indonesian dengue epidemic." Ong Swee Hoe, Yip Jin Teen, Chen Yen Liang, Liu Wei, Harun Syahrial, Lys tiyaningsih Erlin, Heriyanto Bambang, Beckett Charmagne G, Mitchell Wayne P, Hibberd Martin L, Suwandono Agus, Vasudevan Subhash G, Schreiber Mark J (2008) Infect. Genet. Evol. 2008 Mar ; 8(2) : 191-204


  67. "Purification, crystallization and preliminary X-ray diffraction analysis of the HMG domain of Sox17 in complex with DNA." Ng Calista Keow Leng, Palasingam Paaventhan, Venkatachalam Rajakannan, Baburajendran Nithya, Cheng Jason, Jauch Ralf, Kolatkar Prasanna R (2008) Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 2008 Dec 1 ; 64(Pt 12) : 1184-7


  68. "Rapid screening assay for KRAS mutations by the modified smart amplification process." Tatsumi K, Mitani Y, Watanabe J, Takakura H, Hoshi K, Kawai Y, Kikuchi T, Kogo Y, Oguchi-Katayama A, Tomaru Y, Kanamori H, Baba M, Ishidao T, Usui K, Itoh M, Cizdziel PE, Lezhava A, Ueda M, Ichikawa Y, Endo I, Togo S, Shimada H, Hayashizaki Y (2008) J Mol Diagn 2008 Nov ; 10(6) : 520-6 Epub 2008 Oct 2


  69. "RB-finder: an improved distance-based sliding window method to detect recombination breakpoints." Lee Wah-Heng, Sung Wing-Kin (2008) J. Comput. Biol. 2008 Sep ; 15(7) : 881-98


  70. "Regulation of estrogen receptor-mediated long-range transcription via evolutionarily conserved distal response elements." Pan You Fu, Wansa K D Senali Abayratna, Liu Mei Hui, Zhao Bing, Hong Shu Zhen, Tan Peck Yean, Lim Kar Sian, Borque Guillaume, Liu Edison T, Cheung Edwin (2008) J. Biol. Chem. 2008 Aug 25 ; :


  71. "Regulation of mRNAs encoding MMP-9 and MMP-2, and their inhibitors TIMP-1 and TIMP-2 by androgens in the rat ventral prostate." Limaye AM, Desai KV, Chavalmane AK, Kondaiah P (2008) Mol Cell Endocrinol 2008 Nov 6 ; 294(1-2) : 10-8 Epub 2008 Jul 15


  72. "Regulation of neural macroRNAs by the transcriptional repressor, REST" Johnson R, Teh HL, Hui J, Vanisri RR, Pandey T, Lu ZH, Buckley NJ, Lawrence W. Stanton, and Lipovich L. (2008) RNA


  73. "REST regulates distinct transcriptional networks in embryonic and neural stem cells." Johnson Rory, Teh Christina Hui-leng, Kunarso Galih, Wong Kee Yew, Srinivasan Gopalan, Cooper Megan L, Volta Manuela, Chan Sarah Su-ling, Lipovich Leonard, Pollard Steven M, Karuturi R Krishna Murthy, Wei Chia-lin, Buckley Noel J, Stanton Lawrence W (2008) PLoS Biol. 2008 Oct 28 ; 6(10) : e256


  74. "Role of Cdx2 and cell polarity in cell allocation and specification of trophectoderm and inner cell mass in the mouse embryo." Jedrusik Agnieszka, Parfitt David-Emlyn, Guo Guoji, Skamagki Maria, Grabarek Joanna B, Johnson Martin H, Robson Paul, Zernicka-Goetz Magdalena (2008) Genes Dev. 2008 Oct 1 ; 22(19) : 2692-706


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